PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00662g05006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 329aa MW: 37266 Da PI: 4.6863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00662g05006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.2e-06	264	300	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++i +++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Niben101Scf00662g05006.1 264 KKITERLKILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 300 57888899999999986.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.223	250	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-4	261	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.67E-6	264	304	No hit	No description
SuperFamily	SSF47459	4.58E-9	264	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-9	264	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MESVGAFSDE ECQSLSRMFF TENSDFLFQL QCDHPSGLSW HGQEANKNVA DNANIEGSFY 60 SSPSHTFNSN IEYFSQENSN DSRGSDGIFF INNTSHEYLQ YNADVTNLLQ VTNNHPDEST 120 DFYIMGHSNL ENSSVNPSFQ DDDLMKEMVS LKEDIGKEML LKRKFHDIEL QSGAEDQKLE 180 DTKNPKKKQR GSREGPKNKK IAHPKVKKNQ KNMQINNEEV GEQENNNAAK CKSGQSTSSC 240 SSEEDSNASQ ELNTNSDTKS NLNKKITERL KILQNLVPNG TKVDISTMLE EAVQYVKFLQ 300 LQIKLLSSDD MWMYASIAYN GMEMDLSHT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448094.1	0.0	PREDICTED: transcription factor bHLH84-like
TrEMBL	A0A1S3Y813	0.0	A0A1S3Y813_TOBAC; transcription factor bHLH84-like
STRING	XP_009617136.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	8e-32	bHLH family protein