PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00687g08017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 692aa MW: 78284.9 Da PI: 5.2018

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00687g08017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	56.7	5e-18	591	686	280	374
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 ++++ E + +g+ i+n+va+egaer+ r+ +l Wr+ + ++G+ +++lse+ qa+l+l++++ + +v+++ ++l+ Wk Niben101Scf00687g08017.1 591 NTMRRTEVFHIGEGIRNMVAAEGAERFTRNMKLDVWRAYFARFGMVEMELSESSWYQANLILKQFSqGSSCNVQNDGKALLVVWK 675 5677889999******************************************************88889********** PP GRAS 364 drpLvsvSaWr 374 + p+ s+S W+ Niben101Scf00687g08017.1 676 GTPIESISIWK 686 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	1.7E-15	591	686	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MGSSSQICHQ EEKKTVSFFD YVANMLKESF QCLTIILLSL LLPLSFIVLA RLSVARYLIT 60 TSAEYYTLPD SLLVKIFLYA NPNILHVLVP LVAVSALIYG LTGRTILFIK QSADHMTYSK 120 PCLYTAWFFL FMLQLCVCIG VEGSIAIGIG GSSSFSHHER LCLLSRVIFF FGLHETTSFW 180 SKKGVKPVAN DTIFGVETAD DRVVEKVAMA MNFGVLWWWK LRDEVESLVV VAEVKRELIG 240 SVDLVDFVGW WLYYMTVAIG MVKIVKGLIW VCFVLFCGNV VELENAVYST RNDDKAGHNH 300 LQECGRNELV NRVIDPLFEL DSEDIDSLYS VLDLKYQENT SDEHVQLSED QQQNISDYCT 360 QSDDSSSNMD FPLQPVQIQS TFEASNRIQP QVPRLGNFHG KKTNPISSAS LELLNNCGRF 420 FKKSNEENLS NVHINEAHIQ YSTQMVDGLS MFIHPYASAL SGLSMEQTRD MELVHLLLAA 480 AEEVDQQQFH LASQSVARTT PEALTCHTEI PFSQVMQFAG VQAIIENVKG ATKIHLNWNS 540 VYMQALAEQL FMSDMKDLRV ESVNVKADGT VAVYCNVVLR TMISRPEYMD NTMRRTEVFH 600 IGEGIRNMVA AEGAERFTRN MKLDVWRAYF ARFGMVEMEL SESSWYQANL ILKQFSQGSS 660 CNVQNDGKAL LVVWKGTPIE SISIWKFFSG EY

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MGSSSQICHQ EEKKTVSFFD YVANMLKESF QCLTIILLSL LLPLSFIVLA RLSVARYLIT  60
TSAEYYTLPD SLLVKIFLYA NPNILHVLVP LVAVSALIYG LTGRTILFIK QSADHMTYSK  120
PCLYTAWFFL FMLQLCVCIG VEGSIAIGIG GSSSFSHHER LCLLSRVIFF FGLHETTSFW  180
SKKGVKPVAN DTIFGVETAD DRVVEKVAMA MNFGVLWWWK LRDEVESLVV VAEVKRELIG  240
SVDLVDFVGW WLYYMTVAIG MVKIVKGLIW VCFVLFCGNV VELENAVYST RNDDKAGHNH  300
LQECGRNELV NRVIDPLFEL DSEDIDSLYS VLDLKYQENT SDEHVQLSED QQQNISDYCT  360
QSDDSSSNMD FPLQPVQIQS TFEASNRIQP QVPRLGNFHG KKTNPISSAS LELLNNCGRF  420
FKKSNEENLS NVHINEAHIQ YSTQMVDGLS MFIHPYASAL SGLSMEQTRD MELVHLLLAA  480
AEEVDQQQFH LASQSVARTT PEALTCHTEI PFSQVMQFAG VQAIIENVKG ATKIHLNWNS  540
VYMQALAEQL FMSDMKDLRV ESVNVKADGT VAVYCNVVLR TMISRPEYMD NTMRRTEVFH  600
IGEGIRNMVA AEGAERFTRN MKLDVWRAYF ARFGMVEMEL SESSWYQANL ILKQFSQGSS  660
CNVQNDGKAL LVVWKGTPIE SISIWKFFSG EY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016477658.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	K4C3Z1	0.0	K4C3Z1_SOLLC; Uncharacterized protein
STRING	Solyc06g009610.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	9e-11	GRAS family protein