PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00691g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 653aa    MW: 70980 Da    PI: 6.3706
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00691g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.91.2e-19165208145
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                               kpr++W+ eLH++Fv av+qL G ekA+Pk+il++m+v+gLt+e+
  Niben101Scf00691g01002.1 165 KPRVVWSIELHRKFVAAVNQL-GLEKAVPKKILDMMNVDGLTREN 208
                               79*******************.********************987 PP
2Response_reg60.49.9e-2169125109
                               EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
              Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                                v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a++++ ++ + +  Ga d+l+Kp+  eel
  Niben101Scf00691g01002.1   6 TVTTTSQARTALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDSRLVMKGITHGACDYLVKPVRLEEL 89 
                               6899***********999889*******************87754.558***********************************9 PP

                               HH CS
              Response_reg 108 vk 109
                                +
  Niben101Scf00691g01002.1  90 KN 91 
                               86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004481.3E-9193IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.368197IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363929.0E-1322650IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.4E-315118No hitNo description
CDDcd001562.18E-22697No hitNo description
SuperFamilySSF521723.27E-266109IPR011006CheY-like superfamily
PfamPF000721.7E-17691IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466896.63E-12162216IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-20162217IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-15165208IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MICCVTVTTT SQARTALKML RENRDRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS  60
ANSDSRLVMK GITHGACDYL VKPVRLEELK NIWQHVIRKK KVEPKNHIKS DDQDKANQGG  120
GEGGRGPQLS GNADQNEKLN KKRKDEEYES DENGNEDDDP TTQKKPRVVW SIELHRKFVA  180
AVNQLGLEKA VPKKILDMMN VDGLTRENKY RLYLKRISSE ATQQANMVAA LGGKDSAYMR  240
MGSLDGLGGF RTLAGSGRYG QASLSSSYAS GGMLGRLNSP AGVSLRSLAS SPLLQPNHGQ  300
SLSNSMNSFT KLNPNVPPVS QNASLFHGIP ASLELDQLQQ SKCAIRMGEL NPLDEHGLLT  360
AASSTFTDSR SVVGNSNSSL SNFLSNPILL QVNSQQPLTG GGFGNQPSLN VASFSSDAFN  420
TGVSGSSNFL DHSRYNENCQ NSIQPVKLQS SSFPLSEPFS NSHLPQDRVR ENRTSAGPHM  480
QNSTVDFSSS TIVSLPFEAS RGETQCLESL GGGVQIMNQA HYQQWPDQNQ HYSQNSNHIF  540
GNMSSQVSSN GGVASLSHSM DQNNEVVHRG VDVSLIGTSN GGSSALIQHS PDSRTRTSED  600
YLLETTKQQV GFLPQGYGSL DDLMSAMKRE QQDGAMLEGA EFGFDAYSFG SGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20161218164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757804.10.0PREDICTED: two-component response regulator ARR12-like
RefseqXP_016472170.10.0PREDICTED: two-component response regulator ORR24-like
TrEMBLA0A1S4A6C40.0A0A1S4A6C4_TOBAC; Two-component response regulator
TrEMBLA0A1U7V6D80.0A0A1U7V6D8_NICSY; Two-component response regulator
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-99response regulator 12