PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00698g02020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 520aa    MW: 57901.8 Da    PI: 6.7344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00698g02020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH543.1e-17340386455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+ellP++     +K +Ka++L +A+eY+ksLq
  Niben101Scf00698g02020.1 340 VHNLSERRRRDRINEKMKALQELLPHS-----TKTDKASMLDEAIEYLKSLQ 386
                               6*************************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-20334401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.476336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-18339390No hitNo description
PfamPF000101.3E-14340386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-20340394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-18342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MLEFLLCAGW FFGTFNLSEI LCSVVNSSFF QSVVLAMNPY LPEWNTEAEL PVPHQKKPMG  60
FDHELVELLW RNGEVVLHSQ THKKQQGYDP NECRQFNKHD QQTIRDVVSC GNHTNLIQDD  120
ETISWLNCPI DESFEKEFCS PFLSEISTNP IEADQSIRQS EDNKAFKFDP LEIKHVFPHS  180
HHSSFDPNPM PPPRFHNSVS AQKSVKNNLK EGSVMTVGSS HCGRNQVAID ADTSRFSSSA  240
NVGLSAAMIT DYTGKVSPQS DTMDRDTFEP ANTSSSGGSG CSYARTCNLS AATNSQSHKR  300
KSRDGEEPEC QSKAGELESA GGNKLAQKSG TARRSRAAEV HNLSERRRRD RINEKMKALQ  360
ELLPHSTKTD KASMLDEAIE YLKSLQMQLQ MMWMGSGMAS MMFPGVQHYM SRIGMGMGPP  420
TVPSIHNAMH LARLPLVDST IPMNTAAPNQ ATICQNSMLN SVNYQRHLHN PNFQDQYASY  480
MGFHPLQGAS QQMNIFGLGS QTAQQSQQLP HPTNTNAPNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344349ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757612.10.0PREDICTED: transcription factor PIF4
RefseqXP_009757613.10.0PREDICTED: transcription factor PIF4
RefseqXP_016471316.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_016471375.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A1S4A4190.0A0A1S4A419_TOBAC; transcription factor PIF4-like
TrEMBLA0A1U7UTT30.0A0A1U7UTT3_NICSY; transcription factor PIF4
STRINGXP_009757612.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-48phytochrome interacting factor 4