PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00705g05011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 222aa    MW: 25210.5 Da    PI: 7.9193
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00705g05011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer40.65.9e-13771043360
               ZF-HD_dimer  33 geegtaaalkCaACgCHRnFHRreveee 60 
                               geegt++al C+AC+CHRnFHR+e e e
  Niben101Scf00705g05011.1  77 GEEGTIEALICSACNCHRNFHRKEIEGE 104
                               788*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.9E-1174101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-976104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.11E-11159210IPR009057Homeodomain-like
TIGRFAMsTIGR015658.0E-20160205IPR006455Homeodomain, ZF-HD class
Gene3DG3DSA:1.10.10.602.7E-19161211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MEIPSQEEEM PMPINSSYVG GGGHAHGHII HHDRTPVPNN TNHIIPSSVA NSINGPPIEA  60
TPVSADHHVP YKKIVSGEEG TIEALICSAC NCHRNFHRKE IEGEQQLLQL QPPPSSCDYY  120
SLNRGRNFHR KEIEGEQQLL QLQPPPSSCD YYNLNRGGQK KEKMFNFAEK VGWKIQKQEE  180
TVVQQFCQEL GIKRRVLKVW MHNNKHNLAK KNSNITIPQN QV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A1e-161582072675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225555.13e-99PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotO647222e-37ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A314KTD27e-98A0A314KTD2_NICAT; Zinc-finger homeodomain protein 4
STRINGXP_009613099.19e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.15e-28homeobox protein 28
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]