PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00709g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 453aa    MW: 51006.4 Da    PI: 5.4263
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00709g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.31.4e-93574502373
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 
                               ++lL++cA+a++s+d +laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f+
  Niben101Scf00709g01002.1  57 EQLLVHCANAIESNDPTLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIVRAAK--IGTCKLLTANLNHSMEtHKFSIIELAGFV 139
                               79****************************************************..667777766666554424455555555** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                               +++P+++f++ +aN aIleaveg + vHi+Df++++++Q p+L++a+++R egpp l++T+ g+ e        ++ee+g +L +
  Niben101Scf00709g01002.1 140 DLTPWHRFGFTAANGAILEAVEGYSIVHIVDFSLTHCMQIPTLIDAISTRLEGPPLLKLTVAGATEDLppmLDLSYEELGAKLVN 224
                               ****************************************************************776698888999********* PP

                      GRAS 168 fAeelgvpfefnvl.......vakrledleleeLrvkp......gEalaVnlvlqlhrll..............desvsleserd 225
                               fA++ +v +ef+v+        ++      +e+Lr+++      gEal++n++++lh+++              + + s++s r+
  Niben101Scf00709g01002.1 225 FARSRNVMMEFRVIpssssdgFSNV-----IEQLRIQNlirpenGEALVINCHMMLHYIPeettvlsprfpldqSINSSVSSFRT 304
                               *************977644444444.....56665555555578****************************763344555688* PP

                      GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                                +Lk++++l P++vv+v+++ad +s++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r er e
  Niben101Scf00709g01002.1 305 MFLKAIRNLDPTIVVLVDEDADFTSNNLVGRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAHEGLQRLERLE 388
                               ***************************************************************.********************* PP

                      GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +++W +r+++a F++  +se+ ++++k +l +++  g+ ++ +++ +vl+Wk++++v+++aW
  Niben101Scf00709g01002.1 389 PKGQWVQRMRNANFRSSGFSEDSVSEVKNMLDEHA-AGWGLKRDEEDIVLTWKGHNVVFATAW 450
                               ***********************************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.0930432IPR005202Transcription factor GRAS
PfamPF035144.9E-9157450IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMQFTESLPP SLHQQVSPIF SSLMLNMNDN QIQRARPWPG FPTSKNLGTI GDANCMEQLL  60
VHCANAIESN DPTLAQQILW VLNNIAPPDG DSNQRLTCGF LRALIVRAAK IGTCKLLTAN  120
LNHSMETHKF SIIELAGFVD LTPWHRFGFT AANGAILEAV EGYSIVHIVD FSLTHCMQIP  180
TLIDAISTRL EGPPLLKLTV AGATEDLPPM LDLSYEELGA KLVNFARSRN VMMEFRVIPS  240
SSSDGFSNVI EQLRIQNLIR PENGEALVIN CHMMLHYIPE ETTVLSPRFP LDQSINSSVS  300
SFRTMFLKAI RNLDPTIVVL VDEDADFTSN NLVGRLRSAF NYLWIPYDTV DTFLPRGSKQ  360
RQWYEADICW KIENVIAHEG LQRLERLEPK GQWVQRMRNA NFRSSGFSED SVSEVKNMLD  420
EHAAGWGLKR DEEDIVLTWK GHNVVFATAW LPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B5e-493945222420Protein SHORT-ROOT
5b3h_E5e-493945222420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019258371.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A314LGA70.0A0A314LGA7_NICAT; Scarecrow-like protein 32
STRINGXP_009607182.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein