PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00725g01012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 235aa MW: 25606.2 Da PI: 7.8877

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00725g01012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.4	6.3e-30	4	106	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g++ Niben101Scf00725g01012.1 4 SCNGCRVLRKGCNEQCSIKPCLqwiksPESQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLL 88 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelallk 98 +++++ql+q+++e++l + Niben101Scf00725g01012.1 89 TSGNWQLCQAAVEAVLSG 106 **********998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.53	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-24	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MRLSCNGCRV LRKGCNEQCS IKPCLQWIKS PESQSNATLF LAKFYGRAGL LNLINSGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLSGASME KLSPDSAVNS 120 VCPSLKACDI RHVSKENDLT PDLHKVKMRT KFKRVSAKMQ QRNQSPEVDD AARVMWSWSH 180 KEEAMGSPSR DSGLSQQLEG ESGDVGSSSV ETVEASLAKL DESDIGLELT LGCSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792341.1	1e-160	PREDICTED: LOB domain-containing protein 41-like
Refseq	XP_016491547.1	1e-160	PREDICTED: LOB domain-containing protein 41-like
Refseq	XP_019244132.1	1e-160	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	3e-75	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A1J6IKE1	1e-159	A0A1J6IKE1_NICAT; Lob domain-containing protein 41
TrEMBL	A0A1S4BRN6	1e-159	A0A1S4BRN6_TOBAC; LOB domain-containing protein 41-like
TrEMBL	A0A1U7XRS6	1e-159	A0A1U7XRS6_NICSY; LOB domain-containing protein 41-like
STRING	XP_009792341.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-76	LOB domain-containing protein 41