PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00749g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 247aa MW: 28116.2 Da PI: 8.4704

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00749g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F+++ L H++ H Niben101Scf00749g00003.1 95 YECQYCFRNFPTSQALGGHQNAH 117 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.96E-6	93	122	No hit	No description
Pfam	PF13912	1.1E-5	95	119	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.323	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDRTEREALD FMDVESFSQI IPFIRPPSVK EKPIRLFGKE FGGGGNATTT TDMSESIDSN 60 RFHDKPKTNT VTPANYAYKE SHICISNNED ISRKYECQYC FRNFPTSQAL GGHQNAHKRE 120 RQEAKRAHLL QSALAHEANI YGLMNHHRLG EPAAPSTTRH STWNNINNST RFYGNYHANN 180 VITPINRNPL AFWQIPPGVH QNSSTNLGFL NDDLKPFSMV KSPNYDSRSR YEPKGGVQDH 240 LSLDLHL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267119.1	1e-147	PREDICTED: zinc finger protein 8-like
TrEMBL	A0A314KZD0	1e-142	A0A314KZD0_NICAT; Zinc finger protein 8
STRING	XP_009619423.1	1e-137	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1473	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41940.1	8e-36	zinc finger protein 8