PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00757g05005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 299aa    MW: 33580.1 Da    PI: 6.9371
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00757g05005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.38.5e-32511952103
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................... 65 
                                g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                     
  Niben101Scf00757g05005.1  51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLqippgslnpnlypmlgigasq 135
                               689*************************************************************666665555555555444433 PP

                       TCP  66 ........ssssaseceaesssssasnsssg.............................kaaksaakskksqks 103
                                       +               +s+ +++                             ++++++++  +s+++
  Niben101Scf00757g05005.1 136 inkevgikN---------------TSSTNINwdvplepssnvalpynsnflkwdpsnlslAHSENHHHVTSSSHQ 195
                               333333320...............222222244444444444455545555555555555222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-2853133IPR005333Transcription factor, TCP
PROSITE profilePS5136932.01953111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MITREVNKQE GDPDEDGNKS TPNNKASSSS NSTTSWTRLK DPRIVRVSRA FGGKDRHSKV  60
CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLQIPPGS  120
LNPNLYPMLG IGASQINKEV GIKNTSSTNI NWDVPLEPSS NVALPYNSNF LKWDPSNLSL  180
AHSENHHHVT SSSHQHEDIH NFNLMSMPIG SQVLVYPQGL PQSFFHPHNI NVGASSEQFD  240
PKEINFQMLS SENPMSNANS YRHSIDSTSQ SHVRPFHFLP SQNSEGREPN EDREFHNSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1958112155Putative transcription factor PCF6
5zkt_B4e-1958112155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792504.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A1U7XZU90.0A0A1U7XZU9_NICSY; transcription factor TCP13-like
STRINGXP_009792504.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.11e-45TCP domain protein 17