PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00773g14025.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 299aa MW: 33630.1 Da PI: 8.4665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00773g14025.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130	1e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+l+r+C+++C +apyf ++++kkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r++dPvyG++g i +lq+ Niben101Scf00773g14025.1 11 SCAACKFLKRRCTSNCQFAPYFRSDESKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLKDPVYGCIGAIASLQR 95 6********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ++ +l+++l +++++ Niben101Scf00773g14025.1 96 KMVELQHDLMVTRAH 110 ******9998876 PP
2	DUF260	129.1	1.9e-40	138	237	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++p+++red+++slvyeAe+r+r+PvyG++g i +lq+ Niben101Scf00773g14025.1 138 SCAACKFLKRRCTSNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPQDQREDTVNSLVYEAEVRLREPVYGCIGAIASLQR 222 6********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ++ +l+++l +++++ Niben101Scf00773g14025.1 223 KMVELQHDLMVTRAH 237 ******9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.265	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-40	11	108	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	25.104	137	238	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-40	138	235	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MKSNESRSSS SCAACKFLKR RCTSNCQFAP YFRSDESKKF ANVHKVFGAS NVIKILNEVP 60 QDQREDTVNS LVYEAEVRLK DPVYGCIGAI ASLQRKMVEL QHDLMVTRAH LAYYEAKPST 120 SFKKKEAMKS NESRSSSSCA ACKFLKRRCT SNCQFAPYFR SDEPKKFANV HKVFGASNVI 180 KILNEVPQDQ REDTVNSLVY EAEVRLREPV YGCIGAIASL QRKMVELQHD LMVTRAHLAY 240 YEAKPSTCSF LDYDPLNVNG PSVFVDTSLS SGFLDNFSQN SFGIDNSGST NEFGQFPFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	8	241	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	8	241	8	114	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246692.1	1e-111	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	1e-54	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1J6J191	1e-110	A0A1J6J191_NICAT; Lob domain-containing protein 21
STRING	XP_009623318.1	1e-110	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-51	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]