PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00788g03041.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 239aa    MW: 28063 Da    PI: 8.6046
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00788g03041.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.2e-141694998
                              HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                                +k+g + +p  f+++ +g   ++++  +  + g++W vk+  ++++    l++GW++F+++++L+ gD++vF+++g++ef   v+
  Niben101Scf00788g03041.1 16 PGFKHG-IKIPIGFLKNLKGY--NHIEHAILRRAGEKWLVKV--NGGR----LENGWEKFAEEHDLQYGDMLVFRHEGNMEF--EVS 91
                              556666.99******777554..4567888999*********..8887....*************************99999..888 PP

                              EE- CS
                        B3 96 vfr 98
                              +f 
  Niben101Scf00788g03041.1 92 IFH 94
                              875 PP
2B359.27.3e-19137223595
                               -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                        B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                               +++++ l++++l++pk+fa e+g+++++  +lt++de+ rsW++ l  r +s  +++++GW+e  + + LkegD ++F+++ + e
  Niben101Scf00788g03041.1 137 TVKPYCLSKDILSIPKQFAWENGLINKK-CDLTIRDEKQRSWNLVL--RSYSTNVYISGGWNEIRDTHCLKEGDRIMFEVVAD-E 217
                               568999****************988654.59***************..*******************************8874.4 PP

                               E..EEE CS
                        B3  90 felvvk 95 
                               ++++ k
  Niben101Scf00788g03041.1 218 RKPTWK 223
                               445554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-20398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-204102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.914796IPR003340B3 DNA binding domain
CDDcd100171.63E-14893No hitNo description
SMARTSM010197.3E-141096IPR003340B3 DNA binding domain
PfamPF023629.2E-121894IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-17131218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18132225IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.801133230IPR003340B3 DNA binding domain
CDDcd100172.18E-14133212No hitNo description
SMARTSM010193.5E-18134228IPR003340B3 DNA binding domain
PfamPF023627.6E-16136225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MKVSPKKPHF FKPILPGFKH GIKIPIGFLK NLKGYNHIEH AILRRAGEKW LVKVNGGRLE  60
NGWEKFAEEH DLQYGDMLVF RHEGNMEFEV SIFHSNQCER EYEQEQKAHN VEETSKKFEF  120
KGIDSHKPFS QTHFVRTVKP YCLSKDILSI PKQFAWENGL INKKCDLTIR DEKQRSWNLV  180
LRSYSTNVYI SGGWNEIRDT HCLKEGDRIM FEVVADERKP TWKFHAKSGE DASIIQEVD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016473039.11e-151PREDICTED: B3 domain-containing protein REM8-like
TrEMBLA0A1S4A8Y61e-150A0A1S4A8Y6_TOBAC; B3 domain-containing protein REM8-like
STRINGXP_009612472.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-38B3 family protein