PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00792g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 399aa MW: 44312.4 Da PI: 6.2482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00792g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	217	239	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Niben101Scf00792g00006.1 217 YECKTCNRTFPSFQALGGHRASH 239 99**********99999998887 PP
2	zf-C2H2	11.7	0.00081	300	322	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Niben101Scf00792g00006.1 300 HECSYCGAEFISGQALGGHMRRH 322 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.46E-8	216	239	No hit	No description
Pfam	PF13912	3.9E-13	216	241	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	217	239	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	217	244	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	219	239	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.46E-8	295	322	No hit	No description
SMART	SM00355	0.031	300	322	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.93	300	327	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.5E-11	300	324	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	302	322	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDALEEVDAC CPNKDLFHIV KGKRTKRLRL SGVSCNNNNN NNVEDGRDNG ESIAYNNNNI 60 KDDSGNGEGV VTCKNNNNNI EDGRDNEGGG GNEEGVVACK NNNNNIKDDS GNGEDVAYNN 120 NTNKSNNNYS NTSRANSAKI FINTFTAEEE ETAKSLILMS KLSDDHPRPL RFTLPPDNKV 180 DFFNDDLRLY QTKFNSKRYI ETSTNSANGT KAGIYVYECK TCNRTFPSFQ ALGGHRASHK 240 KPKTILTTEL SNKKSSYFDF SDEDDYQELS PSTTTLYKNN KNVTKTLPNS SNKFSSPRIH 300 ECSYCGAEFI SGQALGGHMR RHRGGVNVNS PLNLSNLSPA TSIDQEFGNN IMKKPRDGLS 360 LDLSIPVSND HLDPKFPVVS LNQQDQEQTQ SQQLVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDALEEVDAC CPNKDLFHIV KGKRTKRLRL SGVSCNNNNN NNVEDGRDNG ESIAYNNNNI  60
KDDSGNGEGV VTCKNNNNNI EDGRDNEGGG GNEEGVVACK NNNNNIKDDS GNGEDVAYNN  120
NTNKSNNNYS NTSRANSAKI FINTFTAEEE ETAKSLILMS KLSDDHPRPL RFTLPPDNKV  180
DFFNDDLRLY QTKFNSKRYI ETSTNSANGT KAGIYVYECK TCNRTFPSFQ ALGGHRASHK  240
KPKTILTTEL SNKKSSYFDF SDEDDYQELS PSTTTLYKNN KNVTKTLPNS SNKFSSPRIH  300
ECSYCGAEFI SGQALGGHMR RHRGGVNVNS PLNLSNLSPA TSIDQEFGNN IMKKPRDGLS  360
LDLSIPVSND HLDPKFPVVS LNQQDQEQTQ SQQLVDCHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791832.1	0.0	PREDICTED: uncharacterized protein DDB_G0283357-like
Refseq	XP_016443821.1	0.0	PREDICTED: putative uncharacterized protein DDB_G0289263
TrEMBL	A0A1S3XV49	0.0	A0A1S3XV49_TOBAC; Uncharacterized protein
TrEMBL	A0A1U7XIF4	0.0	A0A1U7XIF4_NICSY; uncharacterized protein DDB_G0283357-like
STRING	XP_009791832.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	3e-37	C2H2 family protein