PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00801g04021.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 343aa    MW: 37696 Da    PI: 7.7549
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00801g04021.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.1e-2786168271
                   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirw 69 
                               ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  Niben101Scf00801g04021.1  86 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdptnghessdqrqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW 166
                               689********...*****999*******************************************************.******* PP

                   E2F_TDP  70 kg 71 
                               kg
  Niben101Scf00801g04021.1 167 KG 168
                               98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.3E-1264343IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.2E-4681173IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.4E-3585168IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.1E-2587168IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.77E-2188169IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.99E-43174276IPR014889Transcription factor DP, C-terminal
SMARTSM011385.5E-69175341IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.54E-42175290No hitNo description
PfamPF087819.3E-43176313IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVNNLDEGGK NPSEVSRRSW GPTTTISGQS VSTSGSVGSP SAVATPGSEN TFVRLNNLDI  60
HADDAASQGA AAKKKRGQRA TGGDKSGRGL RQFSMKVCEK VESKGRTTYN EVADELVAEF  120
SDPTNGHESS DQRQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTDASDIEEL  180
KAERLSLRNR IEKKAAYLEE LEEQYVGLQN LIKRNKQLYG SGNAPSGGVT LPFILVQTRP  240
HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKFCG RQKNDVAAQN ISADGAEGSS  300
SSLANMFQHQ ISHTSASNTP GRRPTPTSPP LPGILKARIK HEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-4079174194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792094.10.0PREDICTED: transcription factor-like protein DPB isoform X2
RefseqXP_016445601.10.0PREDICTED: transcription factor-like protein DPB isoform X2
RefseqXP_019232114.10.0PREDICTED: transcription factor-like protein DPB isoform X2
SwissprotQ9FNY21e-153DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1S3Y0490.0A0A1S3Y049_TOBAC; transcription factor-like protein DPB isoform X2
TrEMBLA0A1U7XYR30.0A0A1U7XYR3_NICSY; transcription factor-like protein DPB isoform X2
STRINGXP_009792084.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-119Transcription factor DP