PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00808g05012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 248aa MW: 26931.9 Da PI: 8.4605

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00808g05012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	46.3	8.7e-15	47	74	35	62
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62 +C ryWt+GG+lrnvPvGgg+rkn++ s Niben101Scf00808g05012.1 47 NCPRYWTEGGTLRNVPVGGGSRKNRRCS 74 8***********************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-7	35	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-9	47	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MDTTQWSQDI GLVTSMAAEI APPNVTCSRP PSTLEKKVRP QKDQVVNCPR YWTEGGTLRN 60 VPVGGGSRKN RRCSSSSLSL SSSLQKLPDS NPNPSLSNQN PNYKINLGNS QDLNLGLPSI 120 IHDHNYFHGV PQFFEFPKME RGNSGNNQPL SSTSSSTPIS TMDLLRTGIA SRGLTSFIST 180 PTPDMNALYT SSFLSGVQEN AAKIMFPFGF LNKQLSGTSA EAENYNQSKE QENSSAGYWN 240 GMLGGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616794.1	1e-147	PREDICTED: dof zinc finger protein DOF2.5-like
Refseq	XP_016470461.1	1e-147	PREDICTED: dof zinc finger protein DOF2.5-like
TrEMBL	A0A1S4A1L9	1e-146	A0A1S4A1L9_TOBAC; dof zinc finger protein DOF2.5-like
STRING	XP_009616794.1	1e-147	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	2e-21	Dof family protein