PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00820g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 164aa    MW: 17640.9 Da    PI: 8.0375
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00820g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.77.9e-136288127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                              +++++C+f+++tG Ck+G+ C+F+H++
  Niben101Scf00820g00001.1 62 PGQPECQFYMKTGDCKFGAVCRFHHPR 88
                              5789*********************96 PP
2zf-CCCH421.5e-13108134127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++lC f++r+G+Ck+G++CkF H++
  Niben101Scf00820g00001.1 108 PGEPLCIFYSRYGICKFGPSCKFDHPM 134
                               689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-66188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.5966189IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-96388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66591IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-66791IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037107135IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-11109134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4112132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGSVSSPEGQ QQTAGNSQVY GTSRSSDAVN MGSQGVTSPY RPASVPMGYY ALQGENVFPE  60
RPGQPECQFY MKTGDCKFGA VCRFHHPRER LIPPPDCMLS PIGLPLRPGE PLCIFYSRYG  120
ICKFGPSCKF DHPMTVFTYS ISASSPTDAP AVQRLLGSSS GTSA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793876.11e-113PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_016438819.11e-113PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF92e-76ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S3XG871e-112A0A1S3XG87_TOBAC; zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U7XW871e-112A0A1U7XW87_NICSY; zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_009793876.11e-113(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.31e-62zinc finger nuclease 3