PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00821g08003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 535aa MW: 58550.1 Da PI: 6.447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00821g08003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	357	405	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf00821g08003.1 357 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 405 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.32E-17	352	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.99E-10	352	409	No hit	No description
PROSITE profile	PS50888	15.51	354	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-17	355	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	357	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	360	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MDMSSKNDTE QLKGNEDAAN FQLPNMSLEW QLSGTNLTNA SIGMIPKSDP TVDSFYPTLW 60 NRPTNSPNLS FYSNNVQINP STTNPHGTAE IGSGRARGGV DRTVGMSWNP PNAMLKGGVF 120 VPPNIGTLPQ SLAQLPADSG FIERAARFSC FSRGNFSDMM NPFSIPESVK PCYRGLAPTC 180 RSEEVFASNG LNSPSAINPR KQHMRNAVES SKDVALHREH EINKESPLKN AKKNENFARC 240 QGEGKEAVGL SGNESDEAEC SGLQEEMEGA REESSSKGLG SKKRKIYGQD SQPDQMKGAQ 300 QPPAEHAQDQ TEIQGEQNLN STATKPGEKN SKQRSQASDP PKEEYIHIRA RRGQATNSHS 360 LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP 420 QLEAKDILQS QAGPSSSLVF PPDNMTMSHT SLHALQSGLL QSGFPGVGNC TDSFRRSINS 480 HYASMSGGYK DTSSQVPNIW DDQLHNVVEM GFNSSAPLNS QDLSSLPPGQ MKEEP

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MDMSSKNDTE QLKGNEDAAN FQLPNMSLEW QLSGTNLTNA SIGMIPKSDP TVDSFYPTLW  60
NRPTNSPNLS FYSNNVQINP STTNPHGTAE IGSGRARGGV DRTVGMSWNP PNAMLKGGVF  120
VPPNIGTLPQ SLAQLPADSG FIERAARFSC FSRGNFSDMM NPFSIPESVK PCYRGLAPTC  180
RSEEVFASNG LNSPSAINPR KQHMRNAVES SKDVALHREH EINKESPLKN AKKNENFARC  240
QGEGKEAVGL SGNESDEAEC SGLQEEMEGA REESSSKGLG SKKRKIYGQD SQPDQMKGAQ  300
QPPAEHAQDQ TEIQGEQNLN STATKPGEKN SKQRSQASDP PKEEYIHIRA RRGQATNSHS  360
LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP  420
QLEAKDILQS QAGPSSSLVF PPDNMTMSHT SLHALQSGLL QSGFPGVGNC TDSFRRSINS  480
HYASMSGGYK DTSSQVPNIW DDQLHNVVEM GFNSSAPLNS QDLSSLPPGQ MKEEP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019228486.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A314KMY7	0.0	A0A314KMY7_NICAT; Transcription factor bhlh49
STRING	XP_009776786.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-93	bHLH family protein