PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00837g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19778.5 Da    PI: 9.8712
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00837g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.51.7e-131559145
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              k+ie++  r+ tfskRr g+ KK +E   LC+++v ++ fs tgk
  Niben101Scf00837g03003.1 15 KKIESEDDRYATFSKRRSGLYKKVSEFVKLCNVDVGIVFFSLTGK 59
                              68***************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.731767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-21779IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-17766IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-14929IPR002100Transcription factor, MADS-box
PfamPF003191.8E-181663IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEGKQTRGRQ KIPMKKIESE DDRYATFSKR RSGLYKKVSE FVKLCNVDVG IVFFSLTGKP  60
FLFFHPTSEA IIDRFLNPNM QLSESSSLVA IHARNKVNQL NNRKQVFDNI KEVASAQSRL  120
LDNMKENGQR YWWESIEQFN ADEITKFEAW LSTTVYNMNN RLEQLKNEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.11e-114PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S4ABV11e-112A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009595132.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-27AGAMOUS-like 61