PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00839g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 226aa    MW: 25197.1 Da    PI: 6.8968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00839g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-2086135356
                       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++ + +++ge
  Niben101Scf00839g00006.1  86 YRGVRQRP-WGKWAAEIRDP-----HkaQRVWLGTFITAEEAARAYDKKAIEFRGE 135
                               9*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.90785142IPR001471AP2/ERF domain
SMARTSM003801.4E-3685148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3285143IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2285144IPR016177DNA-binding domain
CDDcd000183.88E-3186144No hitNo description
PfamPF008475.1E-1286135IPR001471AP2/ERF domain
PRINTSPR003671.4E-118697IPR001471AP2/ERF domain
PRINTSPR003671.4E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVSALRHVIS GADGKTDGEA AQLLREVENA RSASILPRRS IVEPAVSAAT YLACHIGNTT  60
TTFHVKQENL ELQKGRRRRR NTKKEYRGVR QRPWGKWAAE IRDPHKAQRV WLGTFITAEE  120
AARAYDKKAI EFRGEKAKTN FPISEYAAAA ATAVTDHHNN KMPLVVEELQ VQNGVDNIIV  180
AGDDNGESSI HNGDDNGESN MQTGDDFWDT LEDDGLVKWI TKNMSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2184143464ATERF1
3gcc_A1e-2184143464ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497545.11e-136PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A1S4C8T01e-135A0A1S4C8T0_TOBAC; ethylene-responsive transcription factor ERF109-like
STRINGXP_009772463.11e-135(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-30ERF family protein