PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00858g00008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 422aa MW: 46316.1 Da PI: 9.4152

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00858g00008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.2e-05	189	211	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F ++ L++H + H Niben101Scf00858g00008.1 189 TCHKCGEQFGKWEALESHHLSkH 211 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	190	211	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.74E-21	213	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.3E-8	226	401	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLGTIL TRKGGGSRSG CSRSIANLKD 60 VIHGSKRHLE KPPSCSPRSI GSSEFLNPIT HEVILSNSRC ELKITSFNGF QESSPSSTFV 120 GTLRPGTPGP GGNPTMHYFN SGCRNSVATP TRRSASFLVD KEGSANSFPC KNTRHSLDND 180 VNGTSSGVTC HKCGEQFGKW EALESHHLSK HAVSELLEGD SSRKIVEIIC RSSWLKSESH 240 VGRIERVLKV HNTQKTLARF EEYREMVKIK ASKLPKKHPR CIADGNELLR FYGTTLACGL 300 GMNGTCSLCV SDKCCVCRII RNGFTTRKEL KGGIGVFTTS TSARAYECIE LSEDDPSLRK 360 ALIVCRVVAG RVHRPLENIQ EMAGQTGFDS LAGKVGVYSN IEELYLLNPR ALLPCFVVIC 420 KA

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MGEKKNMPAV WFSLKRSLHC KSEPSDVHDP KTKKQLGTIL TRKGGGSRSG CSRSIANLKD  60
VIHGSKRHLE KPPSCSPRSI GSSEFLNPIT HEVILSNSRC ELKITSFNGF QESSPSSTFV  120
GTLRPGTPGP GGNPTMHYFN SGCRNSVATP TRRSASFLVD KEGSANSFPC KNTRHSLDND  180
VNGTSSGVTC HKCGEQFGKW EALESHHLSK HAVSELLEGD SSRKIVEIIC RSSWLKSESH  240
VGRIERVLKV HNTQKTLARF EEYREMVKIK ASKLPKKHPR CIADGNELLR FYGTTLACGL  300
GMNGTCSLCV SDKCCVCRII RNGFTTRKEL KGGIGVFTTS TSARAYECIE LSEDDPSLRK  360
ALIVCRVVAG RVHRPLENIQ EMAGQTGFDS LAGKVGVYSN IEELYLLNPR ALLPCFVVIC  420
KA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593520.1	0.0	PREDICTED: uncharacterized protein LOC104090171
TrEMBL	A0A1S4C434	0.0	A0A1S4C434_TOBAC; uncharacterized protein LOC107814927
STRING	XP_009593520.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2244	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-175	C2H2 family protein