PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00862g01016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 450aa    MW: 48939.2 Da    PI: 5.1429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00862g01016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.4e-163784148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT  Ed +l d+v ++G g+W+++ +  g+ R++k+c++rw ++l
  Niben101Scf00862g01016.1 37 KGPWTSAEDAILMDYVMKHGEGNWNAVQKQSGLARCGKSCRLRWANHL 84
                              79******************************************9986 PP
2Myb_DNA-binding51.72e-1690133146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +g++T+eE+ ++v++++++G++ W++ a +++ gRt++++k++w++
  Niben101Scf00862g01016.1  90 KGAFTPEEERRIVELHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 133
                               799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4613284IPR017930Myb domain
SuperFamilySSF466892.25E-2934131IPR009057Homeodomain-like
SMARTSM007177.8E-123686IPR001005SANT/Myb domain
PfamPF002492.6E-143784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-243891IPR009057Homeodomain-like
CDDcd001678.64E-103984No hitNo description
PROSITE profilePS5129424.5485139IPR017930Myb domain
SMARTSM007171.1E-1589137IPR001005SANT/Myb domain
PfamPF002498.2E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2592137IPR009057Homeodomain-like
CDDcd001671.38E-1192133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSITFETDDM MTSKVDVDSP DEATGGVNAG GSEPLKKGPW TSAEDAILMD YVMKHGEGNW  60
NAVQKQSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERR IVELHAKMGN KWARMAVELP  120
GRTDNEIKNY WNTRIKRHQR AGLPVYPPDI CFLASQNKQN EELSAFSSVD AQNPDVSGTN  180
NFDIPAVEFK NLELNRPLYP PPLFELPSNS LLDITVSGFL AQGHSPPYNS TSFLSTMHPS  240
KRIRGSESMF LSSNGGSLLG QPLGFSSYNN HNVTYDDHGP FSSIVIPGSH APLNGNSSSP  300
EELPSLQNQT ANWGPPSSPF PSLESVDTLI QSPPTGHSES GSDLSPRNSG LLDAMLYGSQ  360
TMKASTDNSH QENETFGDAV DNYYGDPLSP LSHFTASAFS EHAPIDGSSL HEFPSLATMP  420
GCKVKQENVA TSSRQACGRD SCAWDAMSTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30311371106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251987.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLA0A1J6IV500.0A0A1J6IV50_NICAT; Transcription factor gamyb
STRINGXP_009762153.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-76myb domain protein 33