PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00863g07016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 121aa    MW: 13843.5 Da    PI: 6.7705
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00863g07016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54.1e-124267227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C+++ rtG C++G++C+F+H+p
  Niben101Scf00863g07016.1 42 GEPDCSYYIRTGLCRFGSTCRFNHPP 67
                              6899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-54067IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4834068IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-84267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-64568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-44666IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MDISVSEGPP SLSPSLHQDY LWQLNSRSME SLESGPYPVR EGEPDCSYYI RTGLCRFGST  60
CRFNHPPNRK LRLLQRSNPD INRQKQQFKV NFPQDAMSPP EESGHGSFMA ATSNFQNFEM  120
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246920.19e-41PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1J6I9H52e-39A0A1J6I9H5_NICAT; Zinc finger ccch domain-containing protein zfn-like protein
STRINGXP_009626542.12e-39(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-26zinc finger protein 1