PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00863g07022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 236aa    MW: 25725.8 Da    PI: 8.0355
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00863g07022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-1298122327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               +++C+f+++tG Ck+G+ C+F+H++
  Niben101Scf00863g07022.1  98 QPECQFYMKTGDCKFGAVCRFHHPR 122
                               799********************96 PP
2zf-CCCH38.42.1e-12142168127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C f++r+G+Ck+G++CkF H++
  Niben101Scf00863g07022.1 142 PGEPMCIFYSRYGICKFGPSCKFDHPM 168
                               57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.75195123IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-595122IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-998122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-699125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5101125IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5141168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925141169IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-9144168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6144168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4146166IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGNESPLSSK QVGFFTNSTN VFVFFIAISS SKGQFGSVSS AEGQQQTAGN SQVYRSSRSS  60
DKATMGSEGM NSSYRASSLP VGYYALQGEN VFPEQVGQPE CQFYMKTGDC KFGAVCRFHH  120
PRERLLPPPD CLLSPIGLPL RPGEPMCIFY SRYGICKFGP SCKFDHPMRV FTYNISASSS  180
TDDPSVWRLL GSSSGTDVLT LTSEGIVEAA STTPRRLSLS ETRKKPPGDN NFDREG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626545.11e-138PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X6
RefseqXP_009769503.11e-137PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2
RefseqXP_009769505.11e-138PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4
RefseqXP_016437924.11e-138PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X3
RefseqXP_018633486.11e-138PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X5
SwissprotQ9SWF91e-91ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1S3XDL21e-137A0A1S3XDL2_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X3
TrEMBLA0A1U7VT241e-136A0A1U7VT24_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X2
TrEMBLA0A1U7W5G81e-136A0A1U7W5G8_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X4
STRINGXP_009769498.11e-136(Nicotiana sylvestris)
STRINGXP_009626542.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52892439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-62zinc finger protein 1