PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00864g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 512aa    MW: 56120.4 Da    PI: 6.2557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00864g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.56.6e-1081455123374
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               + ++e+A+a+s+g ++ a ++L+rls+ ++ +g+++qRl+ay++ AL++r++       +  pp  +   +s+e++ +++ ++ev
  Niben101Scf00864g01003.1 145 QSITEAATAISEGINHVAVEILTRLSQVSNVSGSSTQRLTAYMVSALRSRVNP-----TDYPPPVLE--LQSKEHTVSTQNLYEV 222
                               67899***********************************************9.....332333222..3589999999****** PP

                      GRAS  88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA 169
                               sP++k+++++aN aIleav  +  +++H++Dfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ ++  g  ++l+++g  L+ +A
  Niben101Scf00864g01003.1 223 SPCFKLGFMAANLAILEAVTDHptNKIHVVDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTEQVGGVDDRLNSIGVELKAVA 307
                               *********************9999***********************77737777*********8888**************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                               +++gv + fnv +a +++dl+ e+L ++p+EalaVn++++l+rl+desv++e+ rde+L+ vk+lsPkv++vveqe++ n+++Fl
  Niben101Scf00864g01003.1 308 NKIGVCLYFNV-MACKITDLSREKLGLEPDEALAVNFAFKLYRLPDESVTMENLRDELLRRVKGLSPKVITVVEQELNGNTAPFL 391
                               **********9.7999********************************************************************* PP

                      GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +r+ ea+ yy alfdsl+a+++r++ er+ +E+  l+r+  n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a++  +
  Niben101Scf00864g01003.1 392 ARVNEACGYYGALFDSLDATVSRDNLERVRIEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVQRPMSQLVANSLCS 475
                               **********************************.******************************************99998877 PP

                      GRAS 340 llrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                l+     + g++v+e+sg +++gW++r+L+++SaWr
  Niben101Scf00864g01003.1 476 KLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAWR 512
                               77654437999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.961117490IPR005202Transcription factor GRAS
PfamPF035142.3E-105145512IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MNTRHTLPVL QQLRSQPALP LANTNISGFS HPGTQNYSTG VHNRATIGQE LLSQESEKKM  60
MNQLQELEKQ LLDDIDEEDG DTVSVVTNNE WSETIQNLIS PCQSQNQNQN QNPNQNQKLA  120
SLSPSSSTSS CASSTESPPI SCPKQSITEA ATAISEGINH VAVEILTRLS QVSNVSGSST  180
QRLTAYMVSA LRSRVNPTDY PPPVLELQSK EHTVSTQNLY EVSPCFKLGF MAANLAILEA  240
VTDHPTNKIH VVDFDVGQGG QYLHLLHALA AKKSEKPAVL KITAFTEQVG GVDDRLNSIG  300
VELKAVANKI GVCLYFNVMA CKITDLSREK LGLEPDEALA VNFAFKLYRL PDESVTMENL  360
RDELLRRVKG LSPKVITVVE QELNGNTAPF LARVNEACGY YGALFDSLDA TVSRDNLERV  420
RIEEGLSRKM ANSVACEGRD RVERCEVFGK WRARMSMAGF VQRPMSQLVA NSLCSKLNSG  480
TRGNPGFTVN EQSGGICFGW MGRTLTVASA WR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-441405129375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233451.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-150SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A075F2G50.0A0A075F2G5_TOBAC; GRAS10 protein
STRINGXP_009614056.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-139SCARECROW-like 8