PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00872g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 277aa    MW: 31074.5 Da    PI: 7.316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00872g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-05112131120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++C  C+k+F+r  n++ H+
  Niben101Scf00872g03004.1 112 FSCAVCNKTFNRFNNMQMHM 131
                               89*****************9 PP
2zf-C2H215.74.3e-05197219123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C +Cgk F  + + ++H +++
  Niben101Scf00872g03004.1 197 FTCRKCGKNFAVRGDWRTHEKNC 219
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-5108133No hitNo description
Gene3DG3DSA:3.30.160.602.9E-5112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355180160192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.38E-6178217No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.663197217IPR007087Zinc finger, C2H2
SMARTSM0035555197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQTHSITYLS SSESGCLETE VEDELSTVLS LGPPGQINLH KNTTKFHFQS CYNQYSSYGE  60
GVTVALHTDS SGTSSNNNNP SKNKGGDMIS VANNGQYWIP TPAQILVGPT QFSCAVCNKT  120
FNRFNNMQMH MWGHGSQYRK GPDSLKGTKP ASPMLRLPCY CCAEGCKNNI EHPRSKPLKD  180
FRTLQTHYKR KHGAKPFTCR KCGKNFAVRG DWRTHEKNCG MLWFCICGSD FKHKRSLKDH  240
VRAFGDGHAP HSEDSYYQVE GDGEDEEEDE DIEEGQS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236543.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-114ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1S3X8B91e-174A0A1S3X8B9_TOBAC; zinc finger protein WIP6-like
TrEMBLA0A1U7Y1321e-174A0A1U7Y132_NICSY; protein TRANSPARENT TESTA 1
STRINGXP_009796838.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein