PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00878g04013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 257aa MW: 28647.5 Da PI: 6.7908

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00878g04013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	42.3	1.9e-13	168	203	2	37
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETT CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsg 37 Cq++gC++ l++ak+yhrrhkvCe+hska++v++++ Niben101Scf00878g04013.1 168 CQADGCNTVLTHAKHYHRRHKVCEFHSKAATVIAAE 203 ********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-13	161	203	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	12.28	165	242	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-12	166	201	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.2E-9	168	202	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
LIGSEQLGEI MLDYEWGIGE ETTQETDQND QFFDPFVNPH AHFSPIRNHL DQQQQQQIQN 60 HQFPQFQTTP NNNHFSFLYN PHTYDVPYSQ THHTSMLSLQ PTGSTGFNTV LPKSEPQFMG 120 GIDFANTSRI GLNLGGRTYF ASSGDDFVSR IFRRTRAVEA GSVNSPKCQA DGCNTVLTHA 180 KHYHRRHKVC EFHSKAATVI AAESPAESGA HSSTVTVAIS PPRISMDCFR QRTYQQAVAH 240 ATTTSSTSTC SLFFSNG

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593420.1	1e-118	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_009593422.1	1e-118	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	5e-40	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A240EUR2	1e-117	A0A240EUR2_TOBAC; Squamosa promter-binding-like protein 8
STRING	XP_009782498.1	1e-117	(Nicotiana sylvestris)
STRING	XP_009593420.1	1e-117	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4846	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	2e-38	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]