PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00883g03019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 231aa    MW: 26597.2 Da    PI: 10.1065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00883g03019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-151966148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g W++eEd++l+ ++ ++G  +W+  ++  g+ Rt+k+c++rw +yl
  Niben101Scf00883g03019.1 19 KGTWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWINYL 66
                              799*****************99************************97 PP
2Myb_DNA-binding47.15.6e-1572117148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g++T eE e  ++  ++lG++ W++Ia++++ gRt++++k++++++l
  Niben101Scf00883g03019.1  72 KGPFTMEERETVIKMYQELGNR-WSAIAAKLP-GRTDNDVKNFFYTHL 117
                               79********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.7271470IPR017930Myb domain
SuperFamilySSF466897.35E-2917113IPR009057Homeodomain-like
SMARTSM007173.3E-121868IPR001005SANT/Myb domain
PfamPF002492.5E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-222073IPR009057Homeodomain-like
CDDcd001671.38E-92166No hitNo description
PROSITE profilePS5129416.10771121IPR017930Myb domain
SMARTSM007173.4E-1471119IPR001005SANT/Myb domain
PfamPF002492.3E-1372117IPR001005SANT/Myb domain
CDDcd001671.15E-974117No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2474121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSSVLQQQQK GTNMEKTKKG TWSPEEDQKL KSYIMRYGIW NWSHMPKFAG LSRTGKSCRL  60
RWINYLNPDV KKGPFTMEER ETVIKMYQEL GNRWSAIAAK LPGRTDNDVK NFFYTHLKKH  120
MGMKNDGQLK SNARRKRVEK TKKAQERPVL FVAINNLTTG TSSNNSLISP DVSSSCSSSS  180
SINTFGENMV ILESNPESHQ SDHCLHIESL DQFDTSSFWF HLLNDAHRLI F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-241911927126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244720.11e-145PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1J6JCR01e-143A0A1J6JCR0_NICAT; Myb-related protein myb4
STRINGXP_009790938.11e-139(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-47myb domain protein 14