PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00887g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 261aa    MW: 30542.8 Da    PI: 7.189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00887g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-18449147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rg W + Ede+l ++v+++G+++W++Ia+ ++ gR++k+c++rw++ 
  Niben101Scf00887g00004.1  4 RGHWRPHEDEKLRELVAKYGPHNWNAIAENLQ-GRSGKSCRLRWYNQ 49
                              899*****************************.************96 PP
2Myb_DNA-binding55.41.4e-175699146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              r ++T+eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Niben101Scf00887g00004.1 56 RSPFTEEEEERLLASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 99
                              789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.281154IPR017930Myb domain
SMARTSM007171.3E-16352IPR001005SANT/Myb domain
PfamPF002491.0E-17450IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-29497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-27557IPR009057Homeodomain-like
CDDcd001671.58E-14748No hitNo description
SMARTSM007171.4E-1555103IPR001005SANT/Myb domain
PROSITE profilePS5129420.89555105IPR017930Myb domain
PfamPF002492.0E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2158104IPR009057Homeodomain-like
CDDcd001672.28E-115898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MCSRGHWRPH EDEKLRELVA KYGPHNWNAI AENLQGRSGK SCRLRWYNQL DPRINRSPFT  60
EEEEERLLAS HRIHGNRWAV IARLFPGRTD NAVKNHWHVI MSRRCRERSK IYSMRNNIAA  120
IPKSTSQQDM STTSPSDQQD DNNIHNIMRK RSSNISVDHQ QQLLERFNYY PFTNNNSLYP  180
KELHFNHLPA HHLKMDEGKN EEVECYDFLR VNTGSNKSEV VEDNITRKDA EEVEEEAGDD  240
NSLQSKAPVR FIDFLSVGDS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3441057108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770258.10.0PREDICTED: transcriptional activator Myb-like
RefseqXP_016446234.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1S3Y2730.0A0A1S3Y273_TOBAC; transcriptional activator Myb-like
TrEMBLA0A1U7VV580.0A0A1U7VV58_NICSY; transcriptional activator Myb-like
STRINGXP_009770258.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-77myb domain protein 52