PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00893g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 368aa MW: 40866.1 Da PI: 5.4352

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00893g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.2	1.1e-06	172	220	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +n+ + RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf00893g00004.1 172 ADKNQHLKVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 220 566777799*****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.22E-8	168	224	No hit	No description
PROSITE profile	PS50888	12.995	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	169	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-13	169	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0016	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MNIALPEMLH SITGNGGNGS SEMSVLERQR VRMKWQQEQL QQPEMMSYFD GQNDHQLMHS 60 YSQTGGAQQF HGLINNVNDQ SLNELVTRAI KPDPCLENNW GDFGTIGTDG LGYVPIGVGN 120 GGTTPQLGLD YAISRTTSCP PNMADNVVSV GKAKESMLSS NRGRESFKKR KADKNQHLKV 180 RREKISERMR FLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDID 240 VDNFFNKDIF ASSTSNFPTM GAGTSSEMLS MAQRQFNSLQ QIVSSSGFEM GILNLSEMAI 300 RRTTSAPVSI PEIFLDSSNI NQVQSFPTWD AELDNIYAME LQQGRSAQFL PHPCTGFVEA 360 GNDLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MNIALPEMLH SITGNGGNGS SEMSVLERQR VRMKWQQEQL QQPEMMSYFD GQNDHQLMHS  60
YSQTGGAQQF HGLINNVNDQ SLNELVTRAI KPDPCLENNW GDFGTIGTDG LGYVPIGVGN  120
GGTTPQLGLD YAISRTTSCP PNMADNVVSV GKAKESMLSS NRGRESFKKR KADKNQHLKV  180
RREKISERMR FLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDID  240
VDNFFNKDIF ASSTSNFPTM GAGTSSEMLS MAQRQFNSLQ QIVSSSGFEM GILNLSEMAI  300
RRTTSAPVSI PEIFLDSSNI NQVQSFPTWD AELDNIYAME LQQGRSAQFL PHPCTGFVEA  360
GNDLKMEM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246582.1	1e-130	PREDICTED: transcription factor bHLH63-like
TrEMBL	A0A1W6GWM4	0.0	A0A1W6GWM4_NICBE; Basic helix-loop-helix
STRING	XP_009762311.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6538	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-39	cryptochrome-interacting basic-helix-loop-helix 1