PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00902g03004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 112aa MW: 12560 Da PI: 6.0955

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00902g03004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.8	5.1e-05	19	39	1	21
TT--SS--HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFek 21 ++ R+++t+eq+++L elF++ Niben101Scf00902g03004.1 19 KCGRWNPTTEQVKVLTELFRS 39 568****************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MSGFSVRARG GCGGGGGTKC GRWNPTTEQV KVLTELFRSG LHFSEIHNYN QGSEHPERVK 60 ETLQLFPLNS LSESESEKLR YFAEECKENA AFSYNIGTEM DHPTLDLRLS FL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016445580.1	3e-42	PREDICTED: WUSCHEL-related homeobox 5-like
TrEMBL	A0A1S3Y0H7	8e-41	A0A1S3Y0H7_TOBAC; WUSCHEL-related homeobox 5-like
STRING	XP_009613150.1	2e-41	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12201	19	22