PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00905g15003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 79aa    MW: 9295.54 Da    PI: 10.8332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00905g15003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-141462147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47
                              +g+W+++Ed +l   v+++G ++W+  +++     gR+++++k+ w+ +
  Niben101Scf00905g15003.1 14 KGAWSKDEDNKLRAFVEKYGHPNWRQLPKYTEklPGRSDNDIKNQWHAH 62
                              79****************************99999***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20767IPR009057Homeodomain-like
PROSITE profilePS5129418.151967IPR017930Myb domain
SuperFamilySSF466896.28E-151067IPR009057Homeodomain-like
SMARTSM007171.3E-121365IPR001005SANT/Myb domain
PfamPF002492.3E-121462IPR001005SANT/Myb domain
CDDcd001672.73E-111663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MVRTPSIDRN GMKKGAWSKD EDNKLRAFVE KYGHPNWRQL PKYTEKLPGR SDNDIKNQWH  60
AHLKKHANII NINSSNTRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019256151.14e-32PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1J6IRA31e-30A0A1J6IRA3_NICAT; Myb-related protein myb4
STRINGPGSC0003DMT4000976042e-28(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.19e-15myb domain protein 63