PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00927g04012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 288aa    MW: 31726 Da    PI: 7.3008
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00927g04012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00013103125123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C+ C k Fs++  L  H++ H
  Niben101Scf00927g04012.1 103 FPCSFCEKKFSTSQALGGHQNAH 125
                               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-5100129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.48E-6100130No hitNo description
PfamPF139121.5E-5102127IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.676103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDAFSMKKPC SSEASSISAA SEEIDPNTKK MKGKVMDLES ELKPHELSSA SVLLDLKVHN  60
GASNLELNLF NSTSSIKNSS PAGESSNEAT PNKQMPSSET RVFPCSFCEK KFSTSQALGG  120
HQNAHRQERA LAKRRNGLLD IVSPFGPPNY HPYYNPYSSY TTHLPFHGSF ASRSSLGYQG  180
DSSAIHKPSP YNSWSFFSGY NYRFNPEKWS SSSSSLFRTE NTFGIGGAPL VNSLKFENKN  240
SAKGFSVRDS PIKVDDNHGG NNKRKMGLGK EDAEENEEET EIDLDLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600727.21e-163PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3X5411e-159A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBLA0A1U7XKL71e-159A0A1U7XKL7_NICSY; zinc finger protein 4
STRINGXP_009600909.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.14e-18zinc finger protein 3