PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00927g06004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 252aa    MW: 28000.8 Da    PI: 7.6959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00927g06004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000216890123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ C++ Fs++  L  H++ H
  Niben101Scf00927g06004.1 68 FSCSFCKREFSTSQALGGHQNAH 90
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-55894IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.99E-66595No hitNo description
PROSITE profilePS5015711.5526895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDLGSELKPR EISSAGVLLD LKVHNGASNL ELNLFNSTSS MKNSAPASES SNEATPNKQR  60
RSSESRVFSC SFCKREFSTS QALGGHQNAH KQERALAKRR NGLVDVVSPF GLPNYHPYYN  120
PYSSYTTHLP FHGSFTSRSS LGVQGDSSTF HKPSPYNPWS VFLGYNYRFN PEKWSSSGSS  180
IFRTENLGIG SAPLENSLKF DNRNSEKGFS LRDSPVKIDN NLGGNNKRKM GFGEEDAEEN  240
EEESEIDLNL KL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787489.11e-162PREDICTED: zinc finger protein 4
RefseqXP_016434992.11e-162PREDICTED: zinc finger protein 4-like
TrEMBLA0A1S3X5411e-160A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBLA0A1U7XKL71e-160A0A1U7XKL7_NICSY; zinc finger protein 4
STRINGXP_009787489.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39672138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.13e-21zinc finger protein 3