PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00953g03002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 186aa MW: 21383.3 Da PI: 9.7799

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00953g03002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.6	4.5e-20	16	61	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+f + k y Niben101Scf00953g03002.1 16 KIENQNNRQVTFSKRRNGVFKKANELVVMTGAEVGIIVFPPGSKPY 61 69************************************98776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.0E-26	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.016	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-24	8	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-16	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-23	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-16	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-16	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSTRLTKGRK SVCLTKIENQ NNRQVTFSKR RNGVFKKANE LVVMTGAEVG IIVFPPGSKP 60 YSFGHPNVDE TIDKYVGEER PPSPSSPHID DKYVQMFRKD NSITLNTQLN TLQDQLDFTL 120 NLKSKLKDKN KNLESQQEWF RGPIEKMNYT EASMLKEGLE DLLLKVKNYG IERGYGYENG 180 KWKMEG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801878.1	1e-124	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1U7YFG2	1e-123	A0A1U7YFG2_NICSY; agamous-like MADS-box protein AGL62
STRING	XP_009801878.1	1e-124	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-26	AGAMOUS-like 62