PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00953g04018.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21067 Da PI: 10.274

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00953g04018.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.7	1.8e-14	16	56	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +ien+ n+qvtfsk rn + KA+ELSv+++aev +i+ + Niben101Scf00953g04018.1 16 KIENQNNQQVTFSKHRNCGFNKASELSVMTGAEVGIIVCPQ 56 79***********************************9755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.498	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.8E-12	7	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.93E-17	9	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-10	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-16	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-10	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-10	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MSTRIIKGHR SARLAKIENQ NNQQVTFSKH RNCGFNKASE LSVMTGAEVG IIVCPQGSKP 60 YSFGHSDVNE TINKYVGEGR PISPSSPAID DKYARKFRKA NSRELNTRLN SLQNQLDFEL 120 NLKSKLNKMN KNVESQQEWF KGPIKKMNYT EASMLKEGLE NLLLKVKNYG TERCYGYENG 180 KWKAV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019248448.1	1e-116	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A1J6J3K3	1e-117	A0A1J6J3K3_NICAT; Agamous-like mads-box protein agl62 (Fragment)
STRING	XP_009769491.1	1e-111	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-20	AGAMOUS-like 62