PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00956g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 159aa    MW: 17647.2 Da    PI: 9.0562
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00956g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP76.11e-231988666
                       TCP  6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........s 66
                              +r+ ++h  v+g+dRR+Rl+ +ca r+F L+++LG+++ + tieWLl qa+ +i ++             
  Niben101Scf00956g02008.1 19 TRTRDRHLRVNGKDRRIRLPTSCAQRVFSLTEKLGHKTVGCTIEWLLMQAESSINAILAKkpsalpspqR 88
                              699*****************************************************99985543333330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-222086IPR005333Transcription factor, TCP
PROSITE profilePS5136918.5772175IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDVTPPPPSS PPLGNHPITR TRDRHLRVNG KDRRIRLPTS CAQRVFSLTE KLGHKTVGCT  60
IEWLLMQAES SINAILAKKP SALPSPQRLP PVVESSIPTS THRNKTVLPP FVFCHGLELE  120
NMEFSREEVE WFASTASSLE SVGSSLPSQH MNVSNEKKC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260924.12e-88PREDICTED: transcription factor TCP11-like
TrEMBLA0A1J6IWH33e-87A0A1J6IWH3_NICAT; Transcription factor tcp11
STRINGXP_009616535.12e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1567257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.12e-18TCP family protein