PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00966g02001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 390aa MW: 44351.1 Da PI: 7.5213

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00966g02001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169	1.5e-52	14	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wka Niben101Scf00966g02001.1 14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPKLATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97 579*************************.89***********8778899************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl Niben101Scf00966g02001.1 98 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141 *****956677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.29E-58	12	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.244	14	172	IPR003441	NAC domain
Pfam	PF02365	1.7E-25	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEGRNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP 60 KLATVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP NDSWAICRIF KKANSNAHRA 180 LSHSWVSPTV PENTTSDFLI SSHFINYSNE ISLINKTSSP IQFSGSTIND LQNSSSNMAS 240 FSTLDLPLYK TLNSNYDPIT SYTFSSCTET SDILPLPKCI NLNNNNIDAS SLLLNMSSSL 300 FGDYSIPLPE NIEGGGVLDQ ETTLKETNHV NNMDHMEEQW RNVRSIGLLP LNNFPLNLAA 360 DAWKTNLLWD SSPCPSSEMS TSYSTNKCYT

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEGRNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP  60
KLATVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP NDSWAICRIF KKANSNAHRA  180
LSHSWVSPTV PENTTSDFLI SSHFINYSNE ISLINKTSSP IQFSGSTIND LQNSSSNMAS  240
FSTLDLPLYK TLNSNYDPIT SYTFSSCTET SDILPLPKCI NLNNNNIDAS SLLLNMSSSL  300
FGDYSIPLPE NIEGGGVLDQ ETTLKETNHV NNMDHMEEQW RNVRSIGLLP LNNFPLNLAA  360
DAWKTNLLWD SSPCPSSEMS TSYSTNKCYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	3	175	5	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	3	175	5	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	3	175	5	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	3	175	5	168	NO APICAL MERISTEM PROTEIN
3swm_A	3e-54	3	175	8	171	NAC domain-containing protein 19
3swm_B	3e-54	3	175	8	171	NAC domain-containing protein 19
3swm_C	3e-54	3	175	8	171	NAC domain-containing protein 19
3swm_D	3e-54	3	175	8	171	NAC domain-containing protein 19
3swp_A	3e-54	3	175	8	171	NAC domain-containing protein 19
3swp_B	3e-54	3	175	8	171	NAC domain-containing protein 19
3swp_C	3e-54	3	175	8	171	NAC domain-containing protein 19
3swp_D	3e-54	3	175	8	171	NAC domain-containing protein 19
4dul_A	2e-54	3	175	5	168	NAC domain-containing protein 19
4dul_B	2e-54	3	175	5	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455718.1	0.0	PREDICTED: protein FEZ-like isoform X2
Swissprot	Q9ZVH0	1e-111	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3YUB9	0.0	A0A1S3YUB9_TOBAC; protein FEZ-like isoform X2
STRING	XP_009629524.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-112	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]