PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00970g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 148aa MW: 16431.7 Da PI: 10.3805

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00970g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	130.3	2.6e-40	29	122	78	170
YABBY 78 eeenlksnvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 ++++ ++ + ++ + s+s + +++ + + + pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdi+hr+afs+aaknW Niben101Scf00970g00003.1 29 QRQQSNVENGSKACGSSSSKCNRFsaIDYSPQIEPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDITHRQAFSTAAKNW 112 334444444444444444444444113445566688888.9****************************************** PP YABBY 161 ahfPkihfgl 170 ahfP+ihfgl Niben101Scf00970g00003.1 113 AHFPHIHFGL 122 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.1E-39	1	122	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-8	66	116	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.5E-5	71	114	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
VSVPCSSIFT VVTVSVPCSS IFTVVTKQQR QQSNVENGSK ACGSSSSKCN RFSAIDYSPQ 60 IEPRITPIRP PEKRQRVPSA YNRFIKEEIQ RIKASNPDIT HRQAFSTAAK NWAHFPHIHF 120 GLKLESNKQA KLDHAVAGEG PHKSLGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009798278.1	2e-79	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016503299.1	2e-79	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q9XFB0	4e-47	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A076FU30	4e-78	A0A076FU30_TOBAC; FAS protein
TrEMBL	A0A1U7Y567	4e-78	A0A1U7Y567_NICSY; axial regulator YABBY 5-like
STRING	XP_009798278.1	6e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-39	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]