PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00984g11002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 281aa MW: 30988.1 Da PI: 7.7069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00984g11002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Niben101Scf00984g11002.1 97 FSCSFCKREFSTSQALGGHQNAH 119 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	7.9E-5	87	123	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.19E-6	94	124	No hit	No description
PROSITE profile	PS50157	11.552	97	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MHAFSMKKPC SSEASSISAA SEEIDINTKK MKGSELKPHE LSSAGVLLDH KVHHGASNLE 60 LNLFNSTSSM KNSAPASESS NEATPNKQRR SSETRVFSCS FCKREFSTSQ ALGGHQNAHK 120 QERALAKRRN GLVDVVSPFG PPNFHPYYNP YSSYTTHLPF HGTFTSRSSL GVQGDSSTIH 180 KPSPYNPWSV FSGYNHRFNP EKWLSPGSSV FRTENLGIGS SPLENSLQFE NKNSAKVFSL 240 RDSPVKIDDN CGGNNKRKAG FGEEDAEENE EESEIDLNLK L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009787489.1	1e-166	PREDICTED: zinc finger protein 4
Refseq	XP_016434992.1	1e-166	PREDICTED: zinc finger protein 4-like
TrEMBL	A0A1S3X541	1e-165	A0A1S3X541_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7XKL7	1e-165	A0A1U7XKL7_NICSY; zinc finger protein 4
STRING	XP_009787489.1	1e-166	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	8e-22	zinc finger protein 3