PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00996g04023.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 227aa MW: 25636.6 Da PI: 7.4299

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00996g04023.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	74	1.9e-23	187	225	2	40
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkver 40 +Dgy+WrKYGqK vk+s+fpr+YYrCt+++C+vkk+ve+ Niben101Scf00996g04023.1 187 EDGYRWRKYGQKAVKNSPFPRNYYRCTTQKCNVKKRVEK 225 8************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-22	171	225	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-20	178	225	IPR003657	WRKY domain
PROSITE profile	PS50811	22.228	181	227	IPR003657	WRKY domain
SMART	SM00774	1.2E-17	186	227	IPR003657	WRKY domain
Pfam	PF03106	2.4E-17	187	225	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MSKNPFYHDY MGTEGINTFP FFGENPGSNY DHPPPNNIQN PHQQFVPSSY MTLTECLHSS 60 MDYTTLSSAF GMSCSSCEVV CPQVDHHDYS SRKISVVSAT EPVIDSPLEG TDVEIPPTTN 120 SSISSISNEA GGEEDSSKSK KLMQGKECQE EGDDKSRKES KAKKKGEKKP KEPRFAFMTK 180 SEIDNLEDGY RWRKYGQKAV KNSPFPRNYY RCTTQKCNVK KRVEKII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-17	176	225	7	56	Probable WRKY transcription factor 4
2lex_A	2e-17	176	225	7	56	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009766292.1	1e-138	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_016432826.1	1e-138	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1S3WZ64	1e-137	A0A1S3WZ64_TOBAC; probable WRKY transcription factor 71
TrEMBL	A0A1U7VE17	1e-137	A0A1U7VE17_NICSY; probable WRKY transcription factor 71
STRING	XP_009766292.1	1e-138	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	4e-31	WRKY DNA-binding protein 28