PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00996g04024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 297aa    MW: 33206.1 Da    PI: 8.432
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00996g04024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK61.41.6e-1989136350
                    RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 
                               k+is++++sk F+lp+  AA +Lgvc++vLK+iC ++G+ RWP+Rk+ 
  Niben101Scf00996g04024.1  89 KSISFDQVSKLFNLPLSYAAESLGVCASVLKKICYENGLVRWPYRKVI 136
                               79********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.07373158IPR003035RWP-RK domain
PfamPF020423.9E-1791135IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MISQLDDPVI QHAYREQNFV ADSLAKYAER QQHGSSLEIF EYACIVESSS VNPPQAMPRV  60
QFNMSNLQGS GPISNPIQNP TPNPSTDPKS ISFDQVSKLF NLPLSYAAES LGVCASVLKK  120
ICYENGLVRW PYRKVISGKS IQDIKEASRE KQERSVEFPK AAGEKHDSFA SSAISSFPGS  180
PLQNKSISST MEMPKAGAFS QQQGTRIFQS GSLPHFRVSN LTRGTSVSYD EFKYGFPSDG  240
LSTVTYRWWG NKSPDNNEDS QLNDDNAKNS KEQAENVAEK LNARQVWIPR KRVHWQM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246984.11e-151PREDICTED: uncharacterized protein LOC109226619
TrEMBLA0A1J6IVJ71e-149A0A1J6IVJ7_NICAT; Uncharacterized protein
STRINGXP_009766294.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107441921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74480.16e-10RWP-RK domain-containing protein