PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01001g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 71aa MW: 8037.94 Da PI: 10.2732

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01001g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.6	2.3e-12	41	71	3	33
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee 33 + k rr+++NReAAr+sR+RKka++++Lee Niben101Scf01001g02005.1 41 DQKTLRRLAQNREAARKSRLRKKAYVQQLEE 71 67899************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-9	36	71	No hit	No description
PROSITE profile	PS50217	9.048	41	71	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-9	42	71	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.99E-7	43	71	No hit	No description
PROSITE pattern	PS00036	0	46	61	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MMADISPSTS TDADTDDKNL RFLNSQPVAS VTSDGSDKPR DQKTLRRLAQ NREAARKSRL 60 RKKAYVQQLE E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018633716.1	7e-42	PREDICTED: transcription factor TGA2.2-like isoform X1
Refseq	XP_018633718.1	7e-42	PREDICTED: transcription factor TGA2.2-like isoform X1
Refseq	XP_018633719.1	3e-42	PREDICTED: transcription factor TGA2.2-like isoform X3
Swissprot	P23923	6e-19	HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBL	A0A1S3ZJ10	3e-40	A0A1S3ZJ10_TOBAC; transcription factor HBP-1b(C38)-like
STRING	XP_009627416.1	4e-41	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA22767	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06950.4	2e-15	bZIP family protein

Publications ? help Back to Top
Tabata T,Nakayama T,Mikami K,Iwabuchi M HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat. EMBO J., 1991. 10(6): p. 1459-67 [PMID:2026143]