PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01013g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 89aa MW: 10170.7 Da PI: 10.1077

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01013g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.8	3.9e-09	3	42	52	91
FAR1 52 rrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +++r+e rtg a+++++++++ k+ v++++++HnH+l+p Niben101Scf01013g00001.1 3 KKPRKEIRTGYLAHMVISRQSNRKFSVISFDENHNHPLVP 42 67899*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-7	3	42	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MVKKPRKEIR TGYLAHMVIS RQSNRKFSVI SFDENHNHPL VPPSLAHLLS SQRNIQLSQS 60 YDINLLDESG ICPKSSFYYA ARQAGEKLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016484692.1	4e-42	PREDICTED: protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A1S4B769	9e-41	A0A1S4B769_TOBAC; protein FAR1-RELATED SEQUENCE 12-like
STRING	XP_009619707.1	1e-31	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-10	FAR1-related sequence 5