PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01020g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 242aa    MW: 28115.3 Da    PI: 4.6682
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01020g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.86.8e-0971116247
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                    SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 
                               +ie +  r+ tfskRr g+ KK + L    +a++ +i+ s++g+l+
  Niben101Scf01020g03001.1  71 KIEREDHRYATFSKRRSGLYKKTSKLVRESGADIGIILTSPSGNLF 116
                               6899999************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-1062121IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.49362122IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-1562133IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-76484IPR002100Transcription factor, MADS-box
PfamPF003194.5E-1371117IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-78499IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-799120IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEEEQKIAME KEKKTAMEEK EKTEEDKTEE KKIAMEEEEE KTEEKKTAME EEEEKTVEKK  60
TTGRQKVPLA KIEREDHRYA TFSKRRSGLY KKTSKLVRES GADIGIILTS PSGNLFSLFH  120
PTSNIVLDRF ENPNIELDYT TQLVATYLHN KVNQSCDRLK EFKTREKIAS QQMILFDQLN  180
ETRQMDQQEY IDQLNFDDIT KYEDWLNGVI FGLENHLKQL ENGASSSSQV PPENADNSST  240
SS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804996.11e-128PREDICTED: MADS-box transcription factor 31-like
TrEMBLA0A1U7YST91e-127A0A1U7YST9_NICSY; MADS-box transcription factor 31-like
STRINGXP_009804996.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-22AGAMOUS-like 61