PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01025g13019.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 201aa MW: 23080 Da PI: 8.6319

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01025g13019.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	177.4	6.3e-55	13	149	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r + l + ++++++++ + ++kr re+ Niben101Scf01025g13019.1 13 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFECQTHVKSTWIPVSRRRPRNHLLRTIQQQQQQKQLQVNPKRYREN---------D 88 6789*******************************************99999998888777777777777765.........1 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + e ++lP+e+ +avfrcvrvssvd+ +++aYqt+v+i+G vfkGiLydqG+++ Niben101Scf01025g13019.1 89 NN-----LAAGGEEEDLPTELGLPAVFRCVRVSSVDNVVDQYAYQTSVNIAGRVFKGILYDQGPDT 149 12.....222345678**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-59	15	148	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.0E-27	17	58	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-22	100	147	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MKMMMMREEG ISSNSRCQDC GNQAKKDCPY LRCRTCCKSR GFECQTHVKS TWIPVSRRRP 60 RNHLLRTIQQ QQQQKQLQVN PKRYRENDNN LAAGGEEEDL PTELGLPAVF RCVRVSSVDN 120 VVDQYAYQTS VNIAGRVFKG ILYDQGPDTE THCNNMARES SSSGFQQEQL TTNLTQPLPS 180 YPSPSNYFMP GTQFFQYPKS F

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255330.1	1e-123	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	Q9LQZ5	2e-53	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A1J6I112	1e-122	A0A1J6I112_NICAT; Protein shi related sequence 1
STRING	XP_009784124.1	1e-116	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-54	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]