PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01026g03013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 330aa    MW: 37644.7 Da    PI: 6.4007
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01026g03013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-091343131
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                              rg W++eEde+l++ ++ +G g+W+++++  
  Niben101Scf01026g03013.1 13 RGLWSPEEDEKLIRHITSHGHGCWSSVPKLA 43
                              788************************9975 PP
2Myb_DNA-binding52.41.2e-164790146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                              rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Niben101Scf01026g03013.1 47 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 90
                              89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-13442IPR009057Homeodomain-like
SuperFamilySSF466892.64E-191088IPR009057Homeodomain-like
SMARTSM00717211244IPR001005SANT/Myb domain
PfamPF002498.3E-71343IPR001005SANT/Myb domain
PROSITE profilePS5129423.8944296IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-214497IPR009057Homeodomain-like
SMARTSM007171.5E-154694IPR001005SANT/Myb domain
PfamPF002492.5E-154790IPR001005SANT/Myb domain
CDDcd001671.68E-114989No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIRHITS HGHGCWSSVP KLADLRRGSF TEQEERTIID  60
VHRILGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLIAQG LDPNTHNLLI KNKTNNSTKA  120
KTHHHQDSTS VFTIDTSTNK EVISMDHIKA TLASFSPFPH SNNTTTSTTY NYTPIPNIEY  180
QNPTFTWSDQ RNQITTTAQS QTSDRNHMIT QNSILGFASC SLMESSTNIR QGETEYINEN  240
SMWHGTGIEP TTLNPAKGTE ELMQVQQEEQ FPIQTKFCDQ EDVYKVINHD QTVENTFDSS  300
NFDFDFVDST LVPCGLYTSI NSMDQISWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1913967108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783085.10.0PREDICTED: transcription factor MYB46-like
RefseqXP_016472474.10.0PREDICTED: transcription factor MYB46-like
TrEMBLA0A1S4A7A40.0A0A1S4A7A4_TOBAC; transcription factor MYB46-like
TrEMBLA0A1U7X9G20.0A0A1U7X9G2_NICSY; transcription factor MYB46-like
STRINGXP_009783085.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-62myb domain protein 67