PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01026g03023.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 333aa    MW: 37065.8 Da    PI: 7.4379
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01026g03023.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.7e-084161526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Niben101Scf01026g03023.1 41 VCTYYQK-GACAYGSRCRYEHV 61
                              5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.619835IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4834IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-71133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6953663IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-53762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-53960IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-54161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0014160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.544139166IPR000571Zinc finger, CCCH-type
SMARTSM003560.58140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.4E-9201266IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.17E-9203273No hitNo description
CDDcd001628.81E-4207266No hitNo description
PfamPF000974.1E-6208264IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001846.6E-7208264IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.209208265IPR001841Zinc finger, RING-type
PROSITE patternPS005180232241IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSQSDSSIYL RVLCKFFAHG ACLKGEHCEF SHDWKTSPNN VCTYYQKGAC AYGSRCRYEH  60
VKLSRSQPSA QSSAQPQQYL LSSSVSTNVA PGVGAQSAGL VPGIYSEYSA SSKLAWNQTS  120
ELHDTLDNDD MIELRSVSPA DRSICAFAAA GNCHHGEKCP HIHGDLCQTC GKHCLHPFRP  180
QEREEHIKTC ENRQKHIDLL KRSQEIECSV CLECVLSKST AAERKFGILS ECDHPFCISC  240
IRNWRGSSSS GMDVNSALRA CPICRKLSYF IIPSVIWYFT KDEKDKISTI FAADIIFTDY  300
SSGKHQHRDG RLAEVVLRHL GSEDGNTVIA KDI
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019239556.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-130C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
SwissprotQ5ZA071e-130C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A1J6KDN00.0A0A1J6KDN0_NICAT; Zinc finger ccch domain-containing protein 69
STRINGXP_009783087.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-117C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  3. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  4. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]