PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01055g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 229aa    MW: 26171.5 Da    PI: 10.8268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01055g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.84e-106113755128
                       NAM  55 ekewyfFskrdkkyatgkrknratk....sgyWkatgkdkevlsk.....kgel....vglkktLvfykgrapkgektdWvmhey 126
                               +++ y Fsk++   +++   +r ++     gyWka g+++ +  +     +  +    vg+kk L fy       + t+W+mh+y
  Niben101Scf01055g00004.1  61 KEKRYLFSKANGDINSN-GCSRLMNgkdcCGYWKAVGQSQLISGSamrdqQ--QhrllVGMKKALRFY-------QTTRWIMHQY 135
                               34668888887766533.333322223348*********999987776441..25667**********.......479******* PP

                       NAM 127 rl 128
                               +l
  Niben101Scf01055g00004.1 136 SL 137
                               97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-1618142IPR003441NAC domain
PROSITE profilePS5100510.30623161IPR003441NAC domain
PfamPF023657.6E-1324137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
KKFQTLAVSS PKLAGGTVGS LNLPIGFRFR PTNEDLSMSL PVVFMLQKII REQLFIAGEL  60
KEKRYLFSKA NGDINSNGCS RLMNGKDCCG YWKAVGQSQL ISGSAMRDQQ QHRLLVGMKK  120
ALRFYQTTRW IMHQYSLVTI SSSDNTDISY VRSHICVIYV NLTWFIVNSP FQGKNVNMMQ  180
VGDWNVFRVY QKKLRISKNL GSKSNGFAEQ CNIKTKTRKR PLNRVLKDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610416.16e-87PREDICTED: NAC domain-containing protein 83-like isoform X1
RefseqXP_019232701.16e-87PREDICTED: NAC domain-containing protein 41-like isoform X1
TrEMBLA0A1J6KYY41e-85A0A1J6KYY4_NICAT; Nac domain-containing protein 41
STRINGXP_009610416.12e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-12NAC domain containing protein 83