PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01063g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 349aa    MW: 38227.5 Da    PI: 7.1697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01063g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.3e-0893117126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt+lC+ f++ G C+y ++C+FaHg
  Niben101Scf01063g00006.1  93 FKTKLCCKFRA-GVCPYINNCNFAHG 117
                               69*********.*************8 PP
2zf-CCCH17.86.1e-06171194326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                + C+ f+    C+yGd+C+F H+
  Niben101Scf01063g00006.1 171 GRHCKKFYTEEGCPYGDTCTFLHD 194
                               5669*****9*************7 PP
3zf-CCCH437.7e-14228253126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++G++C+FaHg
  Niben101Scf01063g00006.1 228 WKTRICNKWETTGYCPFGSKCHFAHG 253
                               8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-889123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1490125IPR000571Zinc finger, CCCH-type
SMARTSM003560.008992118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.66292119IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-9166196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7167196IPR000571Zinc finger, CCCH-type
SMARTSM003560.38168195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.347168196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-17224257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-10224258IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422227255IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDFMGEASFA GGNMIPDSTS NGSGFDNWGP GFSDQAVWAT EDDYRAWNTG PSSETPSSSN  60
RSGSEPPHKK SRSSQGADSH VTSRSKVIGK MFFKTKLCCK FRAGVCPYIN NCNFAHGIEE  120
LRKPPPNWQE IVAEHESEHG GGVMLESREE HQIPTVSSPE LRIETQRSFK GRHCKKFYTE  180
EGCPYGDTCT FLHDEQSRAR ESVAISVTPT VGGFGNNAAG ANLKPSNWKT RICNKWETTG  240
YCPFGSKCHF AHGAAELHKY GGGLMEMEGK DPLSTPPDLR QGGGSLKTTE STVPSTISAP  300
HTDVYHLGPG VQVQRPSGIV QRAGHRVIQK WKGPDKISKI YGDWIDDIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764664.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-123C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U7VQM60.0A0A1U7VQM6_NICSY; zinc finger CCCH domain-containing protein 56-like
STRINGXP_009764664.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-120C3H family protein