PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01082g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 221aa    MW: 25552.4 Da    PI: 8.4432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01082g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-1994145155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++ykGVr+++ +g+++AeIrdp   + k +r +lg++ t+e+Aa a+++ + kl+g
  Niben101Scf01082g04001.1  94 KKYKGVRRRP-WGKYAAEIRDP---KrKGARLWLGTYETPEDAALAYDRTAFKLRG 145
                               59********.**********8...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-3394155No hitNo description
PfamPF008471.9E-1395145IPR001471AP2/ERF domain
PROSITE profilePS5103224.10595153IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-2395154IPR016177DNA-binding domain
SMARTSM003805.5E-3795159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-3195154IPR001471AP2/ERF domain
PRINTSPR003671.6E-996107IPR001471AP2/ERF domain
PRINTSPR003671.6E-9119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MQGISLEFDQ QNFLDTMQHL FNDHDFPQIF SELNSFNNTI QTSRNPGSEN TVFAQNMVQH  60
NQEKYADDHI VPLQETSSEN NKEPSSDQVP FEKKKYKGVR RRPWGKYAAE IRDPKRKGAR  120
LWLGTYETPE DAALAYDRTA FKLRGSRAVL NFPHLIESNV TEINRVRPRR RSRSPDIELS  180
YDQNDGPISK RRNVDLINSL ATANLDSRSI VERCLTSSFF A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2994158468ATERF1
3gcc_A3e-2994158468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009759672.11e-145PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A1U7UUE51e-144A0A1U7UUE5_NICSY; ethylene-responsive transcription factor 13-like
STRINGXP_009759672.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-37ethylene-responsive element binding factor 13