PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01090g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 210aa    MW: 23684.7 Da    PI: 6.3118
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01090g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-201465256
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              +++G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +l+g+
  Niben101Scf01090g00001.1 14 KFRGIRRRP-WGKYAAEIRDPTRNG--ARLWLGTFETAEEAARAYDRAAFSLRGH 65
                              89*******.**********98887..**************************97 PP
2AP2316.1e-10791102456
                       AP2  24 engkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               +n+ +++++lg+f taeeAa+a+++a+ +l+g+
  Niben101Scf01090g00001.1  79 NNN-NTNVPLGTFETAEEAARAYDRAAFSLRGH 110
                               233.6**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.01E-281474No hitNo description
PfamPF008479.0E-141465IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-231473IPR016177DNA-binding domain
PROSITE profilePS5103224.5791472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-311473IPR001471AP2/ERF domain
SMARTSM003801.5E-351479IPR001471AP2/ERF domain
PRINTSPR003677.4E-111526IPR001471AP2/ERF domain
PRINTSPR003677.4E-113854IPR001471AP2/ERF domain
PROSITE profilePS5103212.06261117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1479118IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-1180118IPR016177DNA-binding domain
PfamPF008474.2E-680110IPR001471AP2/ERF domain
SMARTSM003807.2E-580124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDSNEDQRGR RENKFRGIRR RPWGKYAAEI RDPTRNGARL WLGTFETAEE AARAYDRAAF  60
SLRGHQAILN FPNDGDYHNN NNTNVPLGTF ETAEEAARAY DRAAFSLRGH QAILNFPNDG  120
DYHNNNNTNV PLGPRPSYAS SMGNAHMSAS SSLPSSSSAT GSSDQQENVR LEGHDHEEKV  180
IEFEYLDNNL LDELLGSQVH RQADKRPKYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-28174174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610278.11e-91PREDICTED: ethylene-responsive transcription factor ERF098-like
RefseqXP_016485379.11e-91PREDICTED: ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1S4B9253e-90A0A1S4B925_TOBAC; ethylene-responsive transcription factor ERF098-like
STRINGXP_009610278.15e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-22ERF family protein